RUSSIAN JOURNAL OF EARTH SCIENCES VOL. 10, ES1006, doi:10.2205/2007ES000252, 2008


References

Anbar, A. D., and A. H. Knoll (2002), Proterozoic ocean chemistry and evolution: a bioinorganic bridge?, Science, 297, 1137, doi:10.1126/science.1069651. [CrossRef]

Brochier, C., P. Forterre, and S. Gribaldo (2005), An emerging phylogenetic core of Archaea: phylogenies of transcription and translation machineries converge following addition of new genome sequences, BMC Evolutionary Biology, 5, 36, doi:10.1186/1471-2148-5-36. [CrossRef]

Brocks, J. J., G. A. Logan, R. Buick, and R. Summons (1999), Archean molecular fossils and the early rise of eukaryotes, Science, 285, 1033, doi:10.1126/science.285.5430.1033. [CrossRef]

Cammack, R. (1988), Nickel in metalloproteins, Adv. Org. Chemistry, 32, 297.

Cates, N. L., and S. J. Mojzsis (2007), Pre-3750 Ma supracrustal rocks from the Nuvvuagittuq supracrustal belt, northern Québec, Earth Planet. Sci. Lett., 255, (1-2), 9, doi:10.1016/j.epsl.2006.11.034. [CrossRef]

Clarke, A. (2003), Costs and consequences of evolutionary temperature adaptation, Trends in Ecology and Evolution, 18, 573, doi:10.1016/j.tree.2003.08.007. [CrossRef]

Di Toro, D. M., C. D. Kavvadas, R. Mathew, P. R. Paquin, and R. P. Winfield (2001), The Persistence and Availability of Metals in Aquatic Environments, 73 pp., Publication of International Council on Metals and the Environment, Ottawa.

Fedonkin, M. A. (2003a), Geochemical impoverishment and eukaryotization of the biosphere: A causal link, Paleontological Journal (in Russian and English), 37, 592.

Fedonkin, M. A. (2003b), The origin of the Metazoa in the light of the Proterozoic fossil record, Paleontological Research (in Japan), 7, 9.

Fedonkin, M. A. (2004), Metal availability change and eukaryotization of biosphere through the Precambrian, in: Modern Problems of Geology, Transaction of the Geological Institute, vol. 565, edited by Yu. O. Gavrilov and M. D. Hutorskoi (in Russian, with extended English abstract), p. 426, Russian Academy of Sciences, Nauka, Moscow.

Fedonkin, M. A. (2006), Two records of life: experience of comparison (paleobiology and genomics on the early stages of evolution of biosphere), in: Problems of geology and mineralogy, edited by A. M. Pystin (in Russian), p. 331, Geoprint, Syktyvkar.

Fedonkin, M. A. (2007), The birth of the music of life - Hard Rock or Heavy Metal?, in: Transactions of the 4th International Symposium "Mineralogy and Life: Origin of biosphere and co-evolution of mineral and biological worlds, biomineralization'', 21-25 May, 2007, Syktyvkar (in Russian), p. 331, Geoprint, Syktyvkar.

Fedonkin, M., A. Ivantsov, M. Leonov, and E. Serezhnikova (2007a), Dynamics of evolution and biodiversity in late Vendian: a view from the White Sea, in: The Rise and Fall of the Vendian (Ediacaran) Biota, Origin of Modern Biosphere, Proceedings of the International Symposium (IGCP Project 493), edited by M. A. Semikhatov, p. 6, GEOS, Moscow.

Fedonkin, M. A., A. Simonetta, and A. I. Ivantsov (2007b), New data on Kimberella, the Vendian mollusc-like organism (White Sea region, Russia): Paleoecological and evolutionary implications, in: "Rise and Fall of the Vendian Biota'', Special vol. 286, edited by P. Vickers-Rich and P. Komarower, p. 157, Geological Society, London.

Fontecave, M. (2006), Iron-sulfur clusters: ever-expanding roles, Nat. Chem. Biol., 2, 171, doi:10.1038/nchembio0406-171. [CrossRef]

Forterre, P., C. Brochier, and H. Philippe (2002), Evolution of the Archaea, Theoretical Population Biology, 6, 409, doi:10.1006/tpbi.2002.1592. [CrossRef]

Fraústo da Silva, J. J. R., and R. J. P. Williams (1997), The Biological Chemistry of the Elements - The Inorganic Chemistry of life, 672 pp., University, Oxford.

Gaidos, E. J., K. H. Nealson, and J. L. Kirschvink (1999), Life in ice-covered oceans, Science, 284, 1631, doi:10.1126/science.284.5420.1631. [CrossRef]

Galimov, E. M. (2001), Phenomenon of Life: Between Equilibrium and Nonlinearity (Origin and Principles of Evolution) (in Russian), 256 pp., Editorial URSS, Moscow.

Galimov, E. M. (2005), Redox evolution of the Earth caused by a multi-stage formation of its core, Earth Planet. Sci. Lett., 233, 263, doi:10.1016/j.epsl.2005.01.026. [CrossRef]

Harrison, T. M., J. Blichert-Toft, W. Müller, F. Albarede, P. Holden, and S. J. Mojzsis (2005), Heterogeneous Hadean hafnium: evidence of continental crust at 4.4 to 4.5 Ga, Science, 310, 1947, doi:10.1126/science.1117926. [CrossRef]

Hedges, S. B., and S. Kumar (2003), Genomic clocks and evolutionary timescales, Trends in Genetics, 19, 200, doi:10.1016/S0168-9525(03)00053-2. [CrossRef]

Hengeveld, R. (2007), Two approaches to the study of the origin of life, Acta Biotheoretica, 55, 97, doi:10.1007/s10441-007-9017-6. [CrossRef]

Hengeveld, R., and M. A. Fedonkin (2004), Causes and consequences of eukaryotization through mutualistic endosymbiosis and compartmentalization, Acta Biotheoretica, 52, 105, doi:10.1023/B:ACBI.0000043439.34470.29. [CrossRef]

Hengeveld, R., and M. A. Fedonkin (2007), Bootstrapping the energy flow in the beginning of life, Acta Biotheoretica, 55, 181, doi:10.1007/s10441-007-9019-4. [CrossRef]

Hoehler, T. M. (2004), Biological energy requirements as quantitative boundary conditions for life in the subsurface, Geobiology, 2, 205, doi:10.1111/j.1472-4677.2004.00033.x. [CrossRef]

Javoy, M. (1995), The integral enstatite chondrite model of the Earth, Geophys. Res. Lett., 22, doi:10.1029/95GL02015. [CrossRef]

Kadik, A. A., and Yu. A. Litvin (2007), Magmatic transport of carbon, hydrogen and nitrogen constituents from reduced planetary interiors, 38 Lunar and Planetary Science Conference, Lunar and Planetary Institute, Houston, TX, 12-16 March 2007.

Kandler, O. (1994), The early diversification of life, in: Early life on Earth, Nobel Symposium, no. 84, edited by S. Bengtson, p. 152, Columbia University, New York.

Katz, M., Z. Finkel, D. Grzebyk, A. Knoll, and P. Falkowski (2004), Evolutionary trajectories and biogeochemical impacts of marine eukaryotic phytoplankton, Annu. Rev. Ecol. Evolut. Syst., 35, 523, doi:10.1146/annurev.ecolsys.35.112202.130137. [CrossRef]

Kennedy, M., M. Droser, L. Meyer, D. Pevear, and D. Mrofka (2006), Late Precambrian oxygenation: inception of the clay mineral factory, Science, 311, 1446, doi:10.1126/science.1118929. [CrossRef]

Kopp, R. E., J. L. Kirschvink, I. A. Hilburn, and C. Z. Nash (2005), The paleoproterozoic snowball Earth: A climate disaster triggered by the evolution of oxygenic photosynthesis, Proc. Natl. Acad. Sci. U.S.A., 102, 11,131, doi:10.1073/pnas.0504878102. [CrossRef]

Lane, N. (2002), Oxygen, the Molecule that made the World, 46 pp., Oxford University Press, Oxford.

Lane, N. (2006), The last ancestor of all microbes must have been an electrochemist, Nature, 441, 274.

L'vov, N. P., A. N. Nosikov, and A. Antipov (2002), Tungsten-containing enzymes, Biochemistry (Moscow), 67, 196, doi:10.1023/A:1014461913945. [CrossRef]

Margulis, L., M. F. Dolan, and R. Guerrero (2000), The chimeric Eukaryote: origin of the nucleus from the karyomastigont in amitochondriate protists, in: Variation and Evolution in Plants and Microorganisms: Toward a New Synthesis 50 Years after Stebbins, edited by F. J. Ayala, W. M. Fitch and M. T. Clegg, p. 21, National Academy, Washington, D.C..

Martin, W., and M. Müller (1998), The "hydrogen hypothesis'' for the origin of eukaryotes, Nature, 392, 37, doi:10.1038/32096. [CrossRef]

Martin, W., and M. J. Russell (2003), On the origin of cells: An hypothesis for the evolutionary transitions from abiotic geochemistry to chemoautorophic prokaryotes, and from prokaryotes to nucleated cells, Philos. Trans. R. Soc. London, Ser. B, 358, 27.

Marty, B., and R. Yokochi (2006), Water in the early Earth, Reviews in Mineralogy and Geochemistry, 62, 421, doi:10.2138/rmg.2006.62.18. [CrossRef]

McKeegan, K. D., A. B. Kudryavtsev, and J. W. Schopf (2007), Raman and ion microscopic imagery of graphitic inclusions in apatite from older than 3830 Ma Akilia supracrustal rocks, west Greenland, Geology, 35, 591, doi:10.1130/G23465A.1. [CrossRef]

Mereschkowsky, C. (1905), "Uber Natur und Ursprung der Chromatophoren im Pflanzenreiche, Biol. Centralbl., 25, 593 and 689.

Mereschkowsky, C. (1910), Theorie der zwei Plasmaarten als Grundlage der Symbiogenese, einer neuen Lehre von der Entstehung der Organismen, Biol. Centralbl., 30, 278, 321 and 353.

Mereschkowsky, C. (1920), La plante considereé e comme un complexe symbiotique, Bull. Soc. Sci. Nat. France, 6, 17.

Mojzsis, S. J., T. M. Harrison, and R. Pidgeon (2001), Oxygen-isotope evidence from ancient zircons for liquid water at the Earth's surface 4300 Myr ago, Nature, 409, 178, doi:10.1038/35051557. [CrossRef]

Morowitz, H. J. (1992), Beginnings of cellular life: metabolism recapitulates biogenesis, 208 pp., Yale University, New Haven.

Nisbet, E. G., and N. H. Sleep (2001), The habitat and nature of early life, Nature, 409, 1083, doi:10.1038/35059210. [CrossRef]

Oparin, A. I. (1924), The Origin of Life (in Russian), 71 pp., Moscow Worker Publisher, Moscow.

Oparin, A. I. (1967), The Origin of Life, Reprinted and translated by J. D. Bernal, 199-234 pp., Weidenfeld and Nicholson, London.

Pavlov, A. A., and J. F. Kasting (2002), Mass-Independent fractionation of sulfur isotopes in Archean sediments: Strong evidence for an anoxic Archean atmosphere, Astrobiology, 2, 27, doi:10.1089/153110702753621321. [CrossRef]

Prigogine, I., and I. Stengers (1984), Order Out of Chaos: Man's New Dialogue With Nature, 312 pp., Bantam Books, New York.

Ragsdale, S. W. (1998), Nickel biochemistry, Current Opinion in Chemical Biology, 2, 208, doi:10.1016/S1367-5931(98)80062-8. [CrossRef]

Ravasz, E., A. L. Somera, D. A. Mongru, Z. N. Oltvai, and A.-L. Barabasi (2002), Hierarchical organization of modularity in metabolic networks, Science, 297, 1551, doi:10.1126/science.1073374. [CrossRef]

Rouault, T. A., and R. D. Klausner (1996), Iron-sulfur clusters as biosensors of oxidants and iron, TiBS, 21, 174, doi:10.1016/0968-0004(96)10024-4. [CrossRef]

Russell, M. J. (2006), First life, American Scientist, 94, 32, doi:10.1511/2006.1.32. [CrossRef]

Russell, M. J., and A. J. Hall (2006), The onset and early evolution of life, in: Evolution of Early Earth's Atmosphere, Hydrosphere, and Biosphere - Constraints from Ore Deposits, Geol. Soc. Am. Mem., vol. 198, edited by S. E. Kesler and H. Ohmoto, p. 1, University, Glasgow.

Schaefer, L., and B. Fegley, Jr. (2006), Outgassing of ordinary chondritic material and some of its implications for the chemistry of asteroids, planets, and satellites, Icarus, 186, (2), 462, doi:10.1016/j.icarus.2006.09.002. [CrossRef]

Schopf, J. W. (1999), Cradle of Life: The Discovery of Earth's Earliest Fossils, 367 pp., Princeton Univ. Press., Princeton, N.J..

Schulte, M., D. Blake, T. Hoehler, and T. McCollom (2006), Serpentinization and its implications for life on the early Earth and Mars, Astrobiology, 6, 364, doi:10.1089/ast.2006.6.364. [CrossRef]

Semikhatov, M. A., and M. E. Raaben (1996), Dynamics of the global stromatolite diversity in the Proterozoic, Part 2. Africa, Australia, North America, and general synthesis, Stratigraphy and Geological Correlation (in Russian and English), 4, 26.

Sergeev, V. N., M. A. Semikhatov, M. A. Fedonkin, A. Weiss, and N. G. Vorobyeva (2007), Principal stages in evolution of Precambrian organic world: Communication 1, Archean and Early Proterozoic, Stratigraphy and Geological Correlation (in Russian and English), 15, 141, doi:10.1134/S0869593807020025. [CrossRef]

Sorokhtin, O. G., and S. A. Ushakov (2002), Development of Earth (in Russian), 559 pp., University, Moscow.

Staley, J. T. (2006), The metabolism of Earth's first organisms, Molecular Biology and Evolution, 23, 1286.

Stetter, K. O. (1996), Hyperthermophilic procaryotes, FEMS Microbiol. Reviews, 18, 149, doi:10.1111/j.1574-6976.1996.tb00233.x. [CrossRef]

Tian, F., O. B. Toon, A. A. Pavlov, and H. De Sterck (2005), A hydrogen-rich early Earth atmosphere, Science, 308, 1014, doi:10.1126/science.1106983. [CrossRef]

Trail, D., S. Mojzsis, T. Harrison, A. Schmitt, E. Watson, and E. Young (2007), Constraints on Hadean zircon protoliths from oxygen isotopes, Ti-thermometry, and rare earth elements, Geochem. Geophys. Geosyst., 8, Q06014, doi:10.1029/2006GC001449. [CrossRef]

Vignais, P. M., B. Billoud, and J. Meyer (2001), Classification and phylogeny of hydrogenases, FEMS Microbiology Review, 25, 455.

Vinogradov, A. P. (1962), Average content of chemical elements in the major types of volcanic rocks of the earth crust, Geokhimiya (in Russian), 7, 555.

Wächterhäuser, G. (1988), Pyrite formation, the first energy source for life: a hypothesis, Syst. Appl. Microbiol., 10, 207.

Wackett, L. P., A. G. Dodge, and L. B. M. Ellis (2004), Microbial genomics and the Periodic Table, Appl. Environ. Microbiol., 2, 647, doi:10.1128/AEM.70.2.647-655.2004. [CrossRef]

Wilde, S. A., J. W. Valley, W. H. Peck, and C. M. Graham (2001), Evidence from detrital zircons for the existence of continental crust and oceans on the Earth 4.4 Gyr ago, Nature, 409, 175, doi:10.1038/35051550. [CrossRef]

Woese, C. R., O. Kandler, and M. L. Wheelis (1990), Towards a natural system of organisms: proposal for the domains Archaea, Bacteria, and Eucarya, Proc. Natl. Acad. Sci. U.S.A., 87, 4576, doi:10.1073/pnas.87.12.4576. [CrossRef]

Zheng, M., and G. Storz (2000), Redox sensing by prokaryotic transcription factors, Biochem. Pharmacol., 59, 1, doi:10.1016/S0006-2952(99)00289-0. [CrossRef]


RJES

Citation: Fedonkin, M. A. (2008), Ancient biosphere: The origin, trends and events, Russ. J. Earth Sci., 10, ES1006, doi:10.2205/2007ES000252.